I managed to play Cybernoid on joystick port 2. This is how mine looks and works well.
First when you boot Vice from emustation press x and change resolution to 720 x 576 50hz 16/9
In Machine Settings >> Joystick Settings >>
Jystick device in port 1 -> None
Joystick device in port 2 -> Joystick
also in Speed Settings select 1/1
Don’t forget to save settings in settings management.
btw save states also work so load games and make Snapshot -> save state …cool emulator
To load save states navigate through menu Snapshot ->
In sounds settings I opted for Sid + Digiboost.
regards